SerialEM Data Collection
A hands-on microscope operation for SerialEM SPA Data Collection. Prerequisite: SerialEM Introductory Training Workshop or equivalent.
On-site
5 Days
6-8
Trainees
Morning
Practical
Afternoon
Practical
No Cost
Dates: Next workshop dates have not yet been determined
Travel Costs: Covered by applicant
Accommodations: Covered by applicant (discounts at local hotels are available through PNCC)
Location: RLSB
Who: PNCC Awarded General Access Proposal members only
The Pacific Northwest Center for Cryo-EM (PNCC) would like to offer a five-day on-site training workshop for 6-8 trainees on SerialEM data collection at PNCC from (dates TBD). This course is focused on training users to independently operate the microscope and collect data for single particle studies. This is an advanced course where students are required to have basic understanding of SerialEM and Microscope UI. Students are required to take the prerequisite course SerialEM Screening workshop prior to applying or have equivalent training.
APPLY HERE
NOTE: Workshop dates will be determined when enough suitable applicants have applied. To maximize impact, PNCC prefers to train one lab member per group with the intention that member further trains others in their group. Preference of trainees is given to individuals who have research projects ready for cryo-EM investigations and have background in structural biology. Application closes (TBD).
Agenda
Each day includes a combination of presentations, demonstrations, and hands-on practice. Workshop runs from 9am to 5pm (Pacific) each day.
Day 1
- Welcome & Workshop Overview
- Introduction to the SerialEM Data Collection Workflow
- Hands-On Learning: Setting Up the Beam
Day 2
- Introduction to the Gatan Imaging Filter BioContinuum
- Introduction to Gain Collection on the K3 Direct Electron Detector
- Hands-On Learning: Beam and Instrument Setup
Day 3
- Introduction to Montaging, Multishot, and Target Selection
- Introduction to Camera and Scripts
- Hands-On Learning: Full Workflow
Day 4
- Review of Workflow
- Introduction to Parameter Selection
- Preparation for Merit Badge Evaluation
Day 5
- SerialEM Data Collection Merit Badge Evaluation
- Introduction to On-The-Fly Processing
- Workshop Wrap-Up and Next Steps